{ "_id": "6a59cfef09eb0996dd68e30d", "Package": "nlmm", "Type": "Package", "Title": "Generalized Laplace Mixed-Effects Models", "Version": "1.1.0", "Date": "2023-09-04", "Authors@R": "c(person(given=\"Marco\", family=\"Geraci\", role=c(\"aut\", \"cph\", \"cre\"), email=\"marco.geraci@uniroma1.it\", comment = c(ORCID = \"0000-0002-6311-8685\")), person(given=\"Alessio\", family=\"Farcomeni\", role=c(\"ctb\"), email=\"alessio.farcomeni@uniroma2.it\"))", "Maintainer": "Marco Geraci ", "Description": "Provides functions to fit linear mixed models based on\nconvolutions of the generalized Laplace (GL) distribution. The\nGL mixed-effects model includes four special cases with normal\nrandom effects and normal errors (NN), normal random effects\nand Laplace errors (NL), Laplace random effects and normal\nerrors (LN), and Laplace random effects and Laplace errors\n(LL). The methods are described in Geraci and Farcomeni (2020,\nStatistical Methods in Medical Research)\n.", "License": "GPL (>= 2)", "LazyLoad": "yes", "Config/pak/sysreqs": "make libgsl0-dev", "Repository": "https://marco-geraci.r-universe.dev", "Date/Publication": "2023-09-04 13:23:34 UTC", "RemoteUrl": "https://github.com/marco-geraci/nlmm", "RemoteRef": "HEAD", "RemoteSha": "2c2767b7c5bca656bb2e00e4ce80b69f93c85a67", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-07-17 06:41:54 UTC", "User": "root" }, "Author": "Marco Geraci [aut, cph, cre] (ORCID:\n),\nAlessio Farcomeni [ctb]", "_user": "marco-geraci", "_type": "src", "_file": "nlmm_1.1.0.tar.gz", "_fileid": "https://r2.ropensci.org/7dc7d8e4813d13e361f3804dc580a48a407e0501d70701adf9f3ddd9e221227d", "_filesize": 302434, "_sha256": "7dc7d8e4813d13e361f3804dc580a48a407e0501d70701adf9f3ddd9e221227d", "_expires": "2026-10-25T06:47:09.000Z", "_created": "2026-07-17T06:41:54.000Z", "_published": "2026-07-17T06:47:11.446Z", "_jobs": [ { "job": 87822622917, "time": 193, "config": "linux-devel-arm64", "r": "4.7.0", "check": "WARNING", "artifact": "8399217836" }, { "job": 87822622945, "time": 139, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "8399200034" }, { "job": 87822622927, "time": 200, "config": "linux-release-arm64", "r": "4.6.1", "check": "WARNING", "artifact": "8399219415" }, { "job": 87822622955, "time": 177, "config": "linux-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "8399211166" }, { "job": 87822622918, "time": 155, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "8399196883" }, { "job": 87822622961, "time": 272, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "WARNING", "artifact": "8399234058" }, { "job": 87822622916, "time": 139, "config": "macos-release-arm64", "r": "4.6.1", "check": "WARNING", "artifact": "8399194487" }, { "job": 87822622928, "time": 260, "config": "macos-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "8399231984" }, { "job": 87822133067, "time": 202, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8399158345" }, { "job": 87822622920, "time": 143, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8399200867" }, { "job": 87822622911, "time": 171, "config": "windows-devel", "r": "4.7.0", "check": "WARNING", "artifact": "8399209352" }, { "job": 87822622910, "time": 185, "config": "windows-oldrel", "r": "4.5.3", "check": "WARNING", "artifact": "8399213947" }, { "job": 87822622921, "time": 138, "config": "windows-release", "r": "4.6.1", "check": "WARNING", "artifact": "8399199735" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/marco-geraci/actions/runs/29560628759", "_status": "success", "_upstream": "https://github.com/marco-geraci/nlmm", "_commit": { "id": "2c2767b7c5bca656bb2e00e4ce80b69f93c85a67", "author": "Marco Geraci <41693576+marco-geraci@users.noreply.github.com>", "committer": "GitHub ", "message": "Add files via upload", "time": 1693833814 }, "_maintainer": { "name": "Marco Geraci", "email": "marco.geraci@uniroma1.it", "login": "marco-geraci", "description": "", "uuid": 41693576, "orcid": "0000-0002-6311-8685" }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.0.0", "role": "Depends" }, { "package": "nlme", "role": "Depends" }, { "package": "Rcpp", "role": "LinkingTo" }, { "package": "RcppArmadillo", "role": "LinkingTo" }, { "package": "BH", "role": "LinkingTo" }, { "package": "gsl", "role": "Imports" }, { "package": "lqmm", "role": "Imports" }, { "package": "MASS", "role": "Imports" }, { "package": "Matrix", "role": "Imports" }, { "package": "mvtnorm", "role": "Imports" }, { "package": "numDeriv", "role": "Imports" }, { "package": "statmod", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "Qtools", "role": "Imports" }, { "package": "Rcpp", "version": ">= 0.12.13", "role": "Imports" }, { "package": "utils", "role": "Imports" } ], "_owner": "marco-geraci", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "marco-geraci", "count": 37, "uuid": 41693576 } ], "_userbio": { "uuid": 41693576, "type": "user", "name": "Marco Geraci", "followers": 5 }, "_downloads": { "count": 289, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/nlmm" }, "_devurl": "https://github.com/marco-geraci/nlmm", "_searchresults": 0, "_topics": [ "openblas", "cpp" ], "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/nlmm.html", "extra/readme.html", "extra/readme.md", "LICENSE", "manual.pdf" ], "_homeurl": "https://github.com/marco-geraci/nlmm", "_realowner": "marco-geraci", "_cranurl": true, "_releases": [ { "version": "1.0.1", "date": "2020-03-24" }, { "version": "1.0.2", "date": "2022-12-14" }, { "version": "1.1.0", "date": "2023-11-24" }, { "version": "1.1.1", "date": "2025-08-01" } ], "_exports": [ "AIC.nlmm", "C_ll", "C_wdensgl", "dgl", "dl", "dmal", "dmgl", "fixef", "fixef.nlmm", "generate.data", "generate.design", "generate.dist", "lme2nlmm", "loglik_alpha_nlmm", "loglik_nlmm", "logLik.nlmm", "lrt_nlmm", "nlmm", "nlmmControl", "pchibarsq", "pgl", "predict.nlmm", "print.lrt_nlmm", "print.nlmm", "print.summary.nlmm", "qgl", "ranef", "ranef.nlmm", "residuals.nlmm", "rgl", "rl", "rmal", "rmgl", "summary.nlmm", "VarCorr", "VarCorr.nlmm", "Vchibarsq", "vcov.nlmm", "wchibarsq" ], "_datasets": [ { "name": "rats", "title": "Growth curves", "object": "rats", "file": "rats.rda", "class": [ "data.frame" ], "fields": [ "id", "time", "trt", "y" ], "rows": 135, "table": true, "tojson": true } ], "_help": [ { "page": "nlmm-package", "title": "nlmm: Generalized Laplace Mixed-Effects Models", "topics": [ "nlmm-package" ] }, { "page": "fixef.nlmm", "title": "Extract Generalized Mixed-Effects Models Coefficients", "topics": [ "fixef", "fixef.nlmm" ] }, { "page": "generate.data", "title": "Simulate Data from Mixed-Effects Models", "topics": [ "generate.data" ] }, { "page": "GenLaplace", "title": "The Univariate Symmetric Generalized Laplace Distribution", "topics": [ "dgl", "GenLaplace", "pgl", "qgl", "rgl" ] }, { "page": "Laplace", "title": "The Laplace Distribution", "topics": [ "dl", "Laplace", "rl" ] }, { "page": "logLik.nlmm", "title": "Extract Log-Likelihood", "topics": [ "logLik.nlmm" ] }, { "page": "lrt_nlmm", "title": "Likelihood Ratio Test for Generalized Laplace Mixed-Effects Models", "topics": [ "lrt_nlmm", "print.lrt_nlmm" ] }, { "page": "MultivariateGenLaplace", "title": "The Multivariate Asymmetric Generalized Laplace Distribution", "topics": [ "dmgl", "MultivariateGenLaplace", "rmgl" ] }, { "page": "MultivariateLaplace", "title": "The Multivariate Asymmetric Laplace Distribution", "topics": [ "dmal", "MultivariateLaplace", "rmal" ] }, { "page": "nlmm", "title": "Fitting Generalized Laplace Mixed-Effects Models", "topics": [ "nlmm" ] }, { "page": "nlmm.fit", "title": "Fitter Function for Generalized Laplace Mixed-Effects Models", "topics": [ "nlmm.fit" ] }, { "page": "nlmmControl", "title": "Control parameters for nlmm estimation", "topics": [ "nlmmControl" ] }, { "page": "predict.nlmm", "title": "Predictions from an 'nlmm' Object", "topics": [ "predict.nlmm" ] }, { "page": "print.nlmm", "title": "Print an 'nlmm' Object", "topics": [ "print.nlmm" ] }, { "page": "print.summary.nlmm", "title": "Print an 'nlmm' Summary Object", "topics": [ "print.summary.nlmm" ] }, { "page": "ranef", "title": "Extract Random Effects", "topics": [ "ranef", "ranef.nlmm" ] }, { "page": "rats", "title": "Growth curves", "topics": [ "rats" ] }, { "page": "residuals.nlmm", "title": "Residuals from an 'nlmm' Object", "topics": [ "residuals.nlmm" ] }, { "page": "summary.nlmm", "title": "Summary for an 'nlmm' Object", "topics": [ "summary.nlmm" ] }, { "page": "VarCorr", "title": "Extract Variance-Covariance Matrix", "topics": [ "VarCorr", "VarCorr.nlmm" ] }, { "page": "vcov.nlmm", "title": "Calculate Variance-Covariance Matrix for a Fitted Generalized Laplace Mixed-Effects Object", "topics": [ "vcov.nlmm" ] } ], "_readme": "https://github.com/marco-geraci/nlmm/raw/HEAD/README.md", "_rundeps": [ "BH", "boot", "conquer", "corpcor", "crs", "cubature", "Formula", "glmx", "gsl", "gtools", "KernSmooth", "lattice", "lmtest", "lqmm", "MASS", "Matrix", "MatrixModels", "matrixStats", "mvtnorm", "nlme", "np", "numDeriv", "Qtools", "quadprog", "quantdr", "quantreg", "Rcpp", "RcppArmadillo", "sandwich", "SparseGrid", "SparseM", "statmod", "survival", "zoo" ], "_sysdeps": [ { "shlib": "liblapack", "package": "libopenblas0-pthread", "source": "openblas", "version": "0.3.32+ds-5", "name": "openblas", "homepage": "https://www.openblas.net/", "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)" }, { "shlib": "libblas", "package": "libopenblas0-pthread", "source": "openblas", "version": "0.3.32+ds-5", "name": "openblas", "homepage": "https://www.openblas.net/", "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)" }, { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "16-20260322-1ubuntu1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_score": 2.6989700043360187, "_indexed": true, "_nocasepkg": "nlmm", "_universes": [ "marco-geraci" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.1.0", "date": "2026-07-17T06:45:02.000Z", "distro": "resolute", "arch": "aarch64", "commit": "2c2767b7c5bca656bb2e00e4ce80b69f93c85a67", "fileid": "https://r2.ropensci.org/955d62f22abb8162bbebdfe8571a0e561d1fd90e92d79834c49351c494dae83c", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/marco-geraci/actions/runs/29560628759" }, { "r": "4.7.0", "os": "linux", "version": "1.1.0", "date": "2026-07-17T06:44:06.000Z", "distro": "resolute", "arch": "x86_64", "commit": "2c2767b7c5bca656bb2e00e4ce80b69f93c85a67", "fileid": "https://r2.ropensci.org/19b15cba26b8de33c0d05d6391f334d179b2e6164b564bf596fef0a1c4f397b8", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/marco-geraci/actions/runs/29560628759" }, { "r": "4.6.1", "os": "linux", "version": "1.1.0", "date": "2026-07-17T06:45:08.000Z", "distro": "resolute", "arch": "aarch64", "commit": "2c2767b7c5bca656bb2e00e4ce80b69f93c85a67", "fileid": "https://r2.ropensci.org/58113f040d4527566e4e96132658645bb375778dce2396ae649a2b9778a3dd23", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/marco-geraci/actions/runs/29560628759" }, { "r": "4.6.1", "os": "linux", "version": "1.1.0", "date": "2026-07-17T06:44:31.000Z", "distro": "resolute", "arch": "x86_64", "commit": "2c2767b7c5bca656bb2e00e4ce80b69f93c85a67", "fileid": "https://r2.ropensci.org/bd87acbed552a300afbb6f16622d1d0efabc922dfe7a3306929f07496df65643", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/marco-geraci/actions/runs/29560628759" }, { "r": "4.5.3", "os": "mac", "version": "1.1.0", "date": "2026-07-17T06:44:01.000Z", "arch": "aarch64", "commit": "2c2767b7c5bca656bb2e00e4ce80b69f93c85a67", "fileid": "https://r2.ropensci.org/12692cac6be3a7f09572136102424e1c8ff6ce541aed203c36247a5a1baea796", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/marco-geraci/actions/runs/29560628759" }, { "r": "4.5.3", "os": "mac", "version": "1.1.0", "date": "2026-07-17T06:45:28.000Z", "arch": "x86_64", "commit": "2c2767b7c5bca656bb2e00e4ce80b69f93c85a67", "fileid": "https://r2.ropensci.org/15ca7abeec9ec3674326f6e32b302a90b60a4efb4dd22e66f259b8d7bd4dc308", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/marco-geraci/actions/runs/29560628759" }, { "r": "4.6.1", "os": "mac", "version": "1.1.0", "date": "2026-07-17T06:43:49.000Z", "arch": "aarch64", "commit": "2c2767b7c5bca656bb2e00e4ce80b69f93c85a67", "fileid": "https://r2.ropensci.org/3e96403af6fede11f1f2e1c0c3d0d8983a4ee8111f84fe4c724635eb3c9bc5b7", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/marco-geraci/actions/runs/29560628759" }, { "r": "4.6.1", "os": "mac", "version": "1.1.0", "date": "2026-07-17T06:45:11.000Z", "arch": "x86_64", "commit": "2c2767b7c5bca656bb2e00e4ce80b69f93c85a67", "fileid": "https://r2.ropensci.org/c38e4a3a721ab75c57bc453690b896befb667cc0630a455e6b10e35d268712a2", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/marco-geraci/actions/runs/29560628759" }, { "r": "4.6.0", "os": "wasm", "version": "1.1.0", "date": "2026-07-17T06:44:33.000Z", "arch": "emscripten", "commit": "2c2767b7c5bca656bb2e00e4ce80b69f93c85a67", "fileid": "https://r2.ropensci.org/fca57858d1e4f2b8b0c9c084141c40a0d1f16ff71d5e7e43ae227e851f707511", "status": "success", "buildurl": "https://github.com/r-universe/marco-geraci/actions/runs/29560628759" }, { "r": "4.7.0", "os": "win", "version": "1.1.0", "date": "2026-07-17T06:43:58.000Z", "arch": "x86_64", "commit": "2c2767b7c5bca656bb2e00e4ce80b69f93c85a67", "fileid": "https://r2.ropensci.org/f9b5c0e7041abf3d1114cfd5b52f731551f9ee2fa25ad4e017178ab57ae7be5c", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/marco-geraci/actions/runs/29560628759" }, { "r": "4.5.3", "os": "win", "version": "1.1.0", "date": "2026-07-17T06:44:14.000Z", "arch": "x86_64", "commit": "2c2767b7c5bca656bb2e00e4ce80b69f93c85a67", "fileid": "https://r2.ropensci.org/375027ff360323646c8e59ee332cb79966fb060864c0feb625be64cc9d1bc088", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/marco-geraci/actions/runs/29560628759" }, { "r": "4.6.1", "os": "win", "version": "1.1.0", "date": "2026-07-17T06:43:26.000Z", "arch": "x86_64", "commit": "2c2767b7c5bca656bb2e00e4ce80b69f93c85a67", "fileid": "https://r2.ropensci.org/45dae5954cda141e8c1c6f886d312a2e0e1a971e4bc3fe46027bb67f8596473a", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/marco-geraci/actions/runs/29560628759" } ] }